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Hey there, first of all thank you for Milo. I really like working with it and it is pretty straight forward when you understand better the concept and your data of course.
I wanted to ask somethi…
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Hi @nilseling,
I am using a customized image stack and panel ([NB_Panel.csv](https://github.com/BodenmillerGroup/imcRtools/files/9189689/NB_Panel.csv)) for image segmentation with steinbock. When I…
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Please supply the following information:
Short title: SpatialFeatureExperiment Bioc2022
Workshop URL: https://github.com/lambdamoses/SFEWorkshop
Workshop docker image: ghcr.io/lambdamoses/sfework…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/lmweber/WeberDivechaLCdata
Confirm the following …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/peicai/DESpace
Confirm the following by editing e…
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Hello Dr.Crowell,
Currently I am working with some Cytoff data and initially preprocessing & Clustering with “imcRTools” package.
This package results in “spatial experiment class object” with clu…
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This primarily stems from `StoredSpatialImage`s having a very slow `dim` method (and thus `show` method) if the image has not already been loaded into the cache, because it currently needs to obtain a…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Nanostring-Biostats/InSituType
Confirm the follow…
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**Is your feature request related to a problem? Please describe.**
When working with Bioconductor packages, `revdep()` only extracts the information from the Bioconductor software packages. However…
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Hi,
I am trying to use spotlight on ST dataset (not 10x visium but the old protocol) but I get the following error:
Error in .extract_counts(y, assay_sp, slot_sp) :
Couldn't extract image co…