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Hi,
I'm new to using MaSuRCA and I'm having difficulties with the installation. I followed the directions on your page and ended up with many errors running "./install.sh". In general, here's an exam…
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Hello,
I am interested in using Cuttlefish 2 in the genome research I am doing - I know this falls outside the primary scope of Cuttlefish, but I would like to use it at the end of a hybrid genome …
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Hi Guillaume,
I am playing around with minimal (not yet) working examples of your new Bifrost-v1.2.0 release. I am trying to use the new `ColoredCDBG::read()` function as introduced on Jun 11, 2022 (…
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> ### Prerequisites
- [x] make sure you're are using the latest version by `seqkit version`
- [x] read the [usage](http://bioinf.shenwei.me/seqkit/usage/)
I'm using `seqkit locate` to match pat…
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I am trying to use the simple mode to create a prediction output but running into this error.
```
$ unitig-caller --simple --refs inputfa_297.txt --unitigs queries.txt --out calls --threads 20
Co…
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```
Assembling contigs and long reads with miniasm (2017-07-24 18:16:16)
Saving to /miniasm_assembly/01_assembly_reads.fastq:
61,957 long reads
Finding overlaps with minimap...
success
…
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Hi there,
Congratulations on a fantastic, useful tool. I have high coverage ultralong ONT (~70x), Illumina WGS (30x), and PacBio HiFi (currently ~10x). When I run in ccsont mode with just the ONT a…
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Hi,
I've installed `rust-mdbg`
```bash
git clone --recursive https://github.com/ekimb/rust-mdbg.git
cd rust-mdbg
cargo build --release
```
I've run it
```bash
~/git/rust-mdbg/target/r…
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The predicted genome size is 450, and the size assembled by hifisam alone is consistent with the predicted size. Why is the size assembled with this software 570m?
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Hey there,
I'm getting a weird non-specific "Could not run command:" error running:
```prokka --outdir prokka/ --kingdom Bacteria --metagenome --cpus 8 random.fasta --compliant --locustag N --forc…