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Would you mind updating:
https://github.com/mllg/batchtools/blob/75a5b701341c6937c779ce395fe9367dbee99c15/tests/testthat/test_future.R#L5
so that it does not override env var `R_FUTURE_CACHE_PAT…
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Hello Seurat people
My goal is to load my Seurat object into R studio platform and run Monocle 3 for trajectory analysis.
unfortunately, I can't open my Seurat object into the R environment after …
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When I use large data objects, I am getting this error message in the SLURM log file:
> clustermq:::worker("tcp://xxxxxxxxxx:7350")
2019-05-10 13:38:50.189553 | Master: tcp://xxxxxxxxxxx:7350
2019-…
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Error & traceback
```
Error in stop(simpleError(sprintf(...), call = sys.call(sys.parent()))) :
bad error message
9. stop(simpleError(sprintf(...), call = sys.call(sys.parent())))
8.…
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Hi,
the existing result file check in `runCommandline` behaves not as expected. The `output_update` function reverts the file names to `SampleName` and disregard the naming convention from the `cwl…
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Created attachment 2093 [details]
Patch to include the methods package in Rscript defaults
This is a proposal to change the default behavior of Rscript to load the methods package by default. This ha…
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MRE:
```r
library(batchtools)
reg = makeExperimentRegistry(file.dir = NA)
task = binaryclass.task
learner.names = c("classif.lda", "classif.rpart")
learners = lapply(learner.names, m…
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I am currently porting some of my MLR code from running locally with parallelMap to running on a SLURM cluster. However, I encountered a problem when I am exporting some custom functions. I was able t…
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when one needs to make several tasks that should not be used by a specific learner (aka not every possible combination of learner/tasks), using reduceBatchmarkResults is fine, but getBMRAggrPerformanc…
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1) rslurm package has always been active, and is currently active to present
2) rslurm::slurm_apply() provides functionality similar to the apply family in base R, so table should read "yes"