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First of all, fantastic work so far. This program is well on its way to being the brain dumping utility I've been looking for.
Can we also include location data in the file exports though? It's an…
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### Describe the bug
From the screenshot you can see on the horizontal plane that there are parts of the brain that are being removed when registering the brain to MNI space. The steps before, has …
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a. We currently define plot layout (colors, symbols, etc.) based on 1 or more grouping columns. But what if we don’t have any grouping columns at all?
E.g. in the simplest case where we have just 2 c…
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Hi Chris,
Where can I download the annotation files for your test data(half brain tif)?
I only found the full brain tif from https://idisco.info/clearmap-2/
```
AtlasFile = os.path.join(Pat…
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### Title
The BIDS connectivity project - finalization of BEPs
### Short description and the goals for the OHBM BrainHack
Besides `BIDS`' success, expansion, and description of multiple data modali…
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**[ UUID ]** 9990a284-cc3d-4415-bd20-e37e968bb311
**[ Session Name ]** BRRRAAaaaaiiiiNNNNNZZZZZ!!!!
**[ Primary Space ]** Openness
**[ Submitter's Name ]** Katja Heuer
**[ Submitter's Affiliated Or…
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@twood02
I calculated the small-worldness of each brain and compared that metric with each of the 550 behavioral variables.
The small-worldness measure includes clustering coefficient and path l…
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Where can I get the input data of code “Real_data_analysis/dorsolateral_prefrontal_cortex.R”, such as "151507.rds" and "brain_151507_spark.Rdata"?
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### Softwares
FSL 6.0
### Input data
derivatives (fMRIprep)
### Additional context
**Preprocessing**:
- **preprocessing_order**: "First level analysis with FSL, including temporal filt…
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Hi, During the preprocessing steps, you’ve set a threshold to determine non-brain tissue in the mouse and regress that part of signal. But I found that this threshold behaves differently in several ot…