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FP 9 - Documented Plurality of Users
Automated checks:
1. Is there a valid issue tracker?
2. Are there stated usages?
Mechanism:
We can pull the `tracker` value from the ontology YAML. We s…
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Hello I'm trying to run autometa over my metagenomic data. I tried running it before with other dataset and it worked well. When I run it with his new dataset I got an error message appointing to a la…
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## Friday, October 12
### Project Background
#### Prior Sample/Data Processing
* Samples collected from marine environments around the world
* Water sample collected
* Filtered to isolate vir…
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Dear Dr. Cleary,
I would like to try your software on a metagenomics dataset but I don't currently have access to a cluster.
I have paired-end reads for seven samples that total about 346 millio…
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@dn-ra was thinking about `GTDB` compatibility of the classification results.
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Hi Edna,
Thank you so much for making available your pipeline for metagenomics. It has helped me a lot. I am trying to use the cogformat.py for my resutls of rpsblast cog. However, it appears this er…
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Hi,
I'm really interested in using MIST as I think it is a really great software and it can produce the kind of output I'm looking for. However, I have some doubts about how to get the input files.…
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After running the following `fastp` command on my paired-end metagenomics data:
```
fastp -i $f -I ${f/_1./_2.} \
-o ./fastp_filtered/${bn} -O ./fastp_filtered/${bn/_1./_2.} \
--detect_ad…
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Hi Askarbek,
I'm very new on the metagenomics and trying to use your pipeline ASAR using my illumina MiSeq sequencing data.
I got the .fseed, .ko and .seed file from MG-RAST using terminal with…
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### Description of bug
When trying to assemble DNA viral samples using the flags `--metaviral` and `--iontorrent`, spades won't generate any contigs, even when running with positive controls which …