brian-cleary LatentStrainAnalysis issues

brian-cleary / LatentStrainAnalysis

Partitioning and analysis methods for large, complex sequence datasets

MIT License

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issues

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whether LSA would be useful for separating the reads from host and its symbiotic reads

#25 JiaoLaboratory opened 4 years ago
0
Fix kmer length argument in HashCounting.sh

#24 qtleeq closed 5 years ago
0
Python 3 migration

#23 qtleeq opened 5 years ago
2
no access to a cluster

#22 lfaller opened 7 years ago
1
is LSA compatible with drastically different seqeuncing depths per sample?

#21 jvollme opened 7 years ago
0
hashing count issue

#20 igsbma opened 7 years ago
2
write_partition_parts.py crashes on test data

#19 AlphaSquad opened 8 years ago
3
Problem with MergeHash

#18 davidvilanova opened 8 years ago
1
Error in step1

#17 baravalle closed 8 years ago
1
Code update ???

#16 davidvilanova opened 8 years ago
0
SGE scripts

#15 davidvilanova opened 8 years ago
5
Line 46 in create_jobs.py

#14 nmb85 opened 8 years ago
0
removed hard-coded parameter from "HashCounting.sh"

#13 sunitj closed 1 year ago
1
Can we have a discussion about selecting the clustering threshold?

#12 nmb85 opened 8 years ago
0
error during HashCounting.sh with large files (w/o LSFS)

#11 noriko-cassman opened 8 years ago
0
Support for gzipped files?

#10 wichne opened 8 years ago
0
analyzing large dataset analysis without LSF

#9 yxxue opened 8 years ago
2
Error in streaming SVD of abundance matrix

#8 condomitti opened 8 years ago
5
Error in run of kmer_lsi.py

#7 spleonard1 opened 8 years ago
15
Error in Kmer Corpus step

#6 nmb85 closed 8 years ago
7
bug when running test data

#5 mol529 opened 8 years ago
2
Torque Scheduler Support

#4 mbcouger opened 8 years ago
3
fasta support?

#3 scottdaniel opened 8 years ago
4
RuntimeWarning

#2 jffkm opened 8 years ago
1
LSFScripts/SplitInput_ArrayJob.q missing

#1 fmaguire closed 8 years ago
2