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brian-cleary
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LatentStrainAnalysis
Partitioning and analysis methods for large, complex sequence datasets
MIT License
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whether LSA would be useful for separating the reads from host and its symbiotic reads
#25
JiaoLaboratory
opened
4 years ago
0
Fix kmer length argument in HashCounting.sh
#24
qtleeq
closed
6 years ago
0
Python 3 migration
#23
qtleeq
opened
6 years ago
2
no access to a cluster
#22
lfaller
opened
7 years ago
1
is LSA compatible with drastically different seqeuncing depths per sample?
#21
jvollme
opened
7 years ago
0
hashing count issue
#20
igsbma
opened
8 years ago
2
write_partition_parts.py crashes on test data
#19
AlphaSquad
opened
8 years ago
3
Problem with MergeHash
#18
davidvilanova
opened
8 years ago
1
Error in step1
#17
baravalle
closed
8 years ago
1
Code update ???
#16
davidvilanova
opened
8 years ago
0
SGE scripts
#15
davidvilanova
opened
8 years ago
5
Line 46 in create_jobs.py
#14
nmb85
opened
8 years ago
0
removed hard-coded parameter from "HashCounting.sh"
#13
sunitj
closed
1 year ago
1
Can we have a discussion about selecting the clustering threshold?
#12
nmb85
opened
8 years ago
0
error during HashCounting.sh with large files (w/o LSFS)
#11
noriko-cassman
opened
8 years ago
0
Support for gzipped files?
#10
wichne
opened
8 years ago
0
analyzing large dataset analysis without LSF
#9
yxxue
opened
8 years ago
2
Error in streaming SVD of abundance matrix
#8
condomitti
opened
9 years ago
5
Error in run of kmer_lsi.py
#7
spleonard1
opened
9 years ago
15
Error in Kmer Corpus step
#6
nmb85
closed
8 years ago
7
bug when running test data
#5
mol529
opened
9 years ago
2
Torque Scheduler Support
#4
mbcouger
opened
9 years ago
3
fasta support?
#3
scottdaniel
opened
9 years ago
4
RuntimeWarning
#2
jffkm
opened
9 years ago
1
LSFScripts/SplitInput_ArrayJob.q missing
#1
fmaguire
closed
9 years ago
2