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The PSI CV has been tweaked to allow ion mobility terms to be put in the mzIdentML at the SpectrumIdentificationResult the same way `scan start time` already could be:
https://sourceforge.net/p/pside…
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Submitted by wernber on 2012-12-12 16:06:46
Hello all,
Unfortunately it seems, that the import of mzidentML files via IdFileconverter and their conversion into idXML is not supported currently.
I t…
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I think the fix for #100 changed the validator from failing valid files to passing invalid files?
I think the validator is now passing files where there are 4 SpectrumIdentificationItems containin…
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Since the mzIdentML has released its 1.2 version, the current jmzidentml is still writing out 1.1 xml header via 'MZIDML_VERSION' constant defined in ModelConstants.java. Would it be possible to provi…
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Hi.
I created an mzIdentML export that contains crosslinks. I get the following error in the validator:
Message 1:
Rule ID: PeptideModification_must_rule
Level: ERROR
Context(/m…
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In order to use the derivatization agent terms in XLMOD, we will need to be able to resolve parent child relationships between the mapping file parent terms and the child terms given in an mzTab file…
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Hi,
as part of the semantic validation for mzTab for metabolomics project, we need to be able to resolve parent child relationship queries for the PSI XLMOD ontology:
https://raw.githubusercontent.…
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I get constantly errors, e.g. when
- running the same of different data again
- in several example files
As far as I am aware, we only need to read the mzid files from MS-GF+ and then carry out …
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Use mzLib, and the included class generated from schema.
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Hi, my name is Trent and I have been using PIA the past few weeks in attempt to generate some Protein Inference results from ms2 searches using Mascot and Comet.
I have mostly been using the Knime w…