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ProtProtocols
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IsoProt
Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
https://protprotocols.github.io
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Upload a list of modifications
#97
nilitiko
opened
3 years ago
5
Deploying IsoProt using Singularity
#96
ssamberkar
opened
4 years ago
5
Output normalization ratios for QC
#95
veitveit
opened
5 years ago
0
Move to Jupyter Lab
#94
veitveit
opened
5 years ago
0
Add support for RawTools?
#93
chrishuges
opened
5 years ago
2
Add TMT11, TMT7, iTRAQ5 and iTRAQ9
#92
veitveit
opened
5 years ago
1
SearchUI fails silently on writing the output files
#91
iustin94
opened
5 years ago
0
Preliminary assesment of files
#90
iustin94
opened
5 years ago
2
Facilitate manual change of isotope corrections
#89
veitveit
opened
5 years ago
3
Unhandled exception in check_file_printing
#88
iustin94
closed
5 years ago
1
Verbose execution
#87
iustin94
closed
5 years ago
0
R version lets new bioconductor packages fail
#86
veitveit
closed
5 years ago
3
Minimize image size
#85
iustin94
closed
5 years ago
2
Test if output directory is writeable
#84
jgriss
opened
6 years ago
0
Find option to download workbook without code cells
#83
jgriss
opened
6 years ago
0
Notificaton messages are displayed multiple times
#82
jgriss
opened
6 years ago
0
Improve the README a bit (more newbie friendly)
#81
joncison
closed
6 years ago
8
HTML message boxes not rendered in PDF output
#80
jgriss
opened
6 years ago
0
Re-opening a workbook causes very high load
#79
jgriss
closed
6 years ago
2
Methods section not rendered in HTML output
#78
jgriss
opened
6 years ago
0
Ugly error is being displayed in case the config file doesn't fit the version
#77
jgriss
closed
6 years ago
0
Cache MSnbase peaklist object
#76
jgriss
closed
6 years ago
0
Add selection box for PSM-level normalisation
#75
jgriss
closed
6 years ago
4
Add minimum fold-change as parameter
#74
jgriss
opened
6 years ago
0
Run full workflow from command line
#73
veitveit
opened
6 years ago
2
Ensure that Notebooks do not contain any cell output
#72
jgriss
closed
6 years ago
1
Add support for raw files
#71
veitveit
opened
6 years ago
3
Loading previous data triggers error in R scripts
#70
veitveit
closed
6 years ago
3
widgets not always visible
#69
veitveit
closed
6 years ago
11
Releases should contain ready prepared zip files to download
#68
jgriss
closed
6 years ago
2
openBrowser.vbs needs to be shipped with run.bat
#67
jgriss
closed
6 years ago
1
run.bat aborts on Windows 10 if file sharing does not work
#66
jgriss
closed
6 years ago
1
run.bat on Windows 10 does not recognize installed image
#65
jgriss
closed
6 years ago
3
wrong estimation of free memory
#64
veitveit
closed
6 years ago
4
Define docker release process
#63
jgriss
closed
6 years ago
4
ERROR:root:File `'Scripts/methods_generator.ipy.py'` not found.
#62
veitveit
closed
6 years ago
3
Clean source code
#61
veitveit
closed
6 years ago
4
Treatment for variable modifications
#60
veitveit
closed
6 years ago
1
Wrong precursor tolerance range
#59
veitveit
closed
6 years ago
0
Save (search) output to log file
#58
jgriss
closed
6 years ago
5
Error messages from search are not helpful
#57
jgriss
closed
6 years ago
0
Package project in some way
#56
jgriss
closed
6 years ago
5
Warning HTML object may not be visible when displaying messages
#55
jgriss
closed
6 years ago
1
Hide "run_analysis" when loading previous results and the user changes the settings
#54
jgriss
closed
6 years ago
1
Changing spectra directory causes error when read permission is missing
#53
jgriss
closed
6 years ago
0
Change search output to use a dedicated HTML object
#52
jgriss
opened
6 years ago
2
Test on Windows machine
#51
veitveit
closed
6 years ago
6
Avoid change to scrollling cell outputs or increase size
#50
veitveit
closed
6 years ago
0
Mounting folders could fail due to different user IDs
#49
veitveit
closed
6 years ago
1
Save parameters in json file and load them in R again
#48
veitveit
closed
6 years ago
3
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