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Hello,
In the ATPases jamboree, we have looked at GO:0036310 annealing helicase activity (being renamed ATP-dependent DNA/DNA annealing activity, to match its definition better). Some annotations…
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Hi everyone!
I’m using the arrow command **arrow annotations load_gff3** to load a full GFF3 into an annotation track, but nothing's happening.
**The version of my plugin:**
apollo 4.2.13
**…
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* RNA-level predictions: free energy changes associated with nucleotide changes within a window (X bp before, X bp after) a nucleotide change; screen for RNAse targets within sequences (not sure if th…
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**UniProt UniRule (ID and label):**
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
IEA with UR000107549 GO_REF:0000104 43
GO:0000463 mat…
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Hello,
I would like to have some recommendations for using this wonderful tool. First, my goal is to annotate the protein-coding gene and then combine the MetaEuk gff3 annotation file with the Brake…
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Currently, the `reference URL` for GO annotations goes to a URL like this: http://www.ebi.ac.uk/QuickGO/GAnnotation?protein=P60953
QuickGO apparently has changed their deep linking URL pattern. Th…
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If possible, would like to add glycan class annotations to glycans on proteins. This may be an issue for GlycoRDF and to look into defining individuals.
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As stated in [diamond.py](https://github.com/chklovski/CheckM2/blob/d40aef910f24bf7e479e5f7ff1ed326f30d2884b/checkm2/diamond.py):
> Diamond only accepts single inputs, so we concat protein files a…
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Internally in golr the subject of an annotation is the bioentity. The value can be gene, protein, other gene product, complex. We need a standardized label for this -see #194.
`Gene/product` is what …
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Reported by a user:
http://current.geneontology.org/products/pages/downloads.html annotation counts are apparently showing counts calculated BEFORE IBAs are appended, so the counts are incorrect.
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