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Hi,
I am trying to create a compound node and move some elements to that compound node by using eles.move( ) function. I observed that when width or height attribute is set for nodes, eles.move( ) …
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Checking out the latest the code from the repository, after I did a `pip install .`, some of the nose tests fail as follows:
```
$ nosetests .
EE......EEE..EE..
======================================…
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From the wiki, this is where we got to:
So we should go through this, check up on the open jira tickets and take it from here.
- Discussion about search behavior for phenotypes (alleles, conditions, m…
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"KRAS:MUT=G12" should return all mutations on G12 position.
jjgao updated
9 years ago
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Umbrella issue for features that make Cycledash a better tool for the PGV team's quest to call somatic mutations faster.
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I am trying to use map and mod to add sequences to the graph (as new paths). This does not work as expected on some simple examples (derived from existing unit tests). (originally mentioned a while a…
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over expression allele for pka1 is unnamed (unknown)
e.g
http://stage.pombase.org/spombe/result/SPBC106.10
I am wondering firstly, how are these stored, and I wonder how they should be stored ?
I t…
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If allele's either start OR end is in gene body, and counter coordinate, is in intron, how one should handle at simple allele level.
Example is here:
NM_007294.3(BRCA1):c.5153-16_5156del20insAATA
htt…
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Hi,
Is there a specific reason why response to ethylene
stimulus (GO:0009723) or its parent term response to
hormone stimulus (GO:0009725) are under response to
endogenous stimulus (GO:0009719). …
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(this might already be an open item, but...)
unknown | 424
>Unfortunately, there are some alleles that have type "unknown" that
should have one of the other types. I've on…