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Hi,
not a huge deal but perhaps things changed during the last update. make test doesn't find pychopper script which can be solved by moving pychopper to the scripts folder.
Also I'm trying to use p…
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Thank you for developing the nanopolish. I have a question as the topic, is the methylation detection suitable for for direct RNA sequencing?
Looking forward for your reply.
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Hi~
I have run STAR-fusion in two different mode (directly use fastq files and Kickstart mode). When I compare results from these different modes, I find the result is quite different.So,which mode…
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Hi,
I am attempting to analyse some Nanopore direct RNA sequencing reads using flair but appear to be stuck at the correction/collapse steps. Specifically, I cannot obtain the psl of corrected read…
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Hi marcus:
I have a few questions to ask you for advice about identifying of modified bases from direct RNA nanopore data about the model species arabidopsis thaliana and would appreciate your he…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/reese3928/NBAMSeq
Confirm the following by editin…
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Dear Bcbio Team,
I upgraded bcbio recently to v1.1.5 and I am getting below error when running gatk-variant pipeline.
[April 28, 2019 10:11:25 AM AST] org.broadinstitute.hellbender.tools.spark.A…
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Hi,
Recently,I try to identify of 5mC from Direct RNA nanopore sequencing data by Tombo and encount
some problems.
First, when running preprocess annotate_raw_with_fastqs ,the log …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/MarioniLab/MouseGastrulationData
Confirm the foll…
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why they are man "U" in the sequences files?
@evogytis, this should be "T", unless you are direct sequencing the RNA.
ghost updated
5 years ago