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DotKnot is a heuristic method for pseudoknot prediction in a given RNA sequence.
DotKnot extracts stem regions from the secondary structure probability dot plot calculated by RNAfold. Recursive H-typ…
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metabolism is a child of physiological processes, but
not cellular process 0009987?
Reported by: ValWood
Original Ticket: "geneontology/ontology-requests/1142":https://sourceforge.net/p/geneontology…
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Hello,
Someone pointed out that 21 models of BioModels DB had wrong GO annotations. It turns out they were annotated with GO:0043037 that formerly was "translation". When I searched that ID in AMIGO …
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I would like to annotate proteins that bind RNA stem-loops in various snRNAs. I notice we already have several RNA binding terms for specific snRNAs but this doesn't really capture the stem-loop bindi…
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Hi,
I am trying to create a compound node and move some elements to that compound node by using eles.move( ) function. I observed that when width or height attribute is set for nodes, eles.move( ) …
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Great work on the RNA 2D visualisation! Here is a feature request: it would be good to add an option for visualising non-canonical RNA basepairs using the [Leontis-Westhof nomenclature](http://www.ncb…
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New term request:
RNA metabolic process;GO:0016070
is_a RNA duplex unwinding; GO:new
definition:
The process by which interchain hydrogen bonds between two strands of RNA are broken or 'melted', ge…
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**Reported by jenniferdaub on 2008-12-24 09:57 UTC**
We would like to add a new term for cis regulatory frameshift elements such as http://en.wikipedia.org/wiki/Antizyme\_RNA\_frameshifting\_stimulati…
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**Reported by nlw on 2009-05-27 17:57 UTC**
need a term for the antisense part of a miRNA. mature strand is the side that represents the functional miRNA, the * strand is the other side (opposite str…
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follow up to:
http://sourceforge.net/tracker/index.php?func=detail&aid=1906309&group\_id=36855&atid=440764
compare the def of
GO:0000965 ! mitochondrial RNA 3'-end processing [DEF: "Any process invol…