-
With `string-join`, you can create a string for multiple strings, optionally interspersed with a separator. `array:join` can be used to create an array from multiple arrays.
`fn:intersperse`, which…
-
```
In a production environment where databases may do master-master
replication, it a good idea to prevent conflicts on auto-incremented
values. A way to manage this is to reserve a range of sequence…
-
Hi,
I have created a db (canoncical) with 51mers. When i run query sequence of 51bp (25bp-SNP-25bp) it'll mostly return counts of 0. However if i lengthen those query sequences to 101bp(50bp-SNP-50…
-
Hi,
This resource is amazing, thank you for your work.
I was wondering if there was any updates in the ISFinder database since the 2020 update on this repo?
Thanks
-
@wyp1125 @XTan hi,i hope you will be fine.i need your help, i am new user of MCScanX.i have successfully installed MCScanX. after that i have installed ncbi-blast+.now i am confuse in "at.blast" file.…
-
Hi
I would like to taxonomically classify my protein sequences based on the GTDB taxonomy combined with the ncbi taxonomy of NR viruses and NR eukaryotes.
Do you have any suggestions on how I co…
-
A list of tool that can be considered if GBIF considers to produce own reference databases.
[RESCRIPt](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009581) **Reproducible…
-
Hi,
Thanks for creating this tool.
I have downloaded the nr protein database using the following commands,
kraken2-build --download-taxonomy --DB nr
kraken2-build --download-library nr --DB nr
k…
-
1. The first time, I installed EarlGrey **v4.4.0** and RepeatMasker **v4.16**, and I ran around 50 species using this version. The running time of every species was less than 3 days, and those res…
-
Hi. I made my personal small database of interest using "Building customized databases" tutorial. It was not obvious because of "cstranslate -b" that was poorly documented.
I want to query this dat…