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Hi Kirstie,
Thanks for thse great scripts.
I am able to organize my data (as instructed in https://github.com/HappyPenguin/DTI_PROCESSING/wiki/Getting-Started) such that I can run wrapper.sh (or dti_…
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# Setting up Environment
- devcontainer.json for vscode to help w/ development, by starting container in containers folder, and also install vs-code extensions
- e.g. prettiercode, and better-comm…
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When I walk through the [vignette](https://htmlpreview.github.io/?https://github.com/mccabes292/actor/blob/master/vignettes/actor.html), I am unable to generate a gene plot; I get the error "Can't fin…
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Many of the tests we run yield numerical values as output. For example, fluster tests may produce a "score" value, and boot time tests may return values in seconds or microseconds. Currently, we only …
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- [x] Explore cBioPortal
- [x] See what data is available
- [x] What is their license
- [x] How can we download the data
- [x] etc
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**Describe the bug**
`brainreg` should be useable on all platforms when installed via the metapackage on PyPI. Local installation on M2 Mac seems successful, but running the CLI on sample data fails …
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### A short summary of what you would like to see in *NiBabies*.
Scale brain size flag based off of the age of the participant. Will need to find or make a table for the best brain size for each age.…
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Just wondering: `\storage.hest.corp.brain.mpg.de\Data\Data\berningm\20150205paper1submission\` is accessible for me. Is it also for the reviewer? How to get the data?
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**Describe the bug**
Pipeline builder crashes when trying to preprocess a new functional dataset and a previously run functional dataset already exists in the output directory.
**To Repr…
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## The issue
In addition to the MNI coordinates of each sample, the Allen Institute provides a detailed ontology of the brain structure each sample was ostensibly taken from in each donor brain. Us…