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## Bug report
### Expected behavior and actual behavior
Nextflow should be able to access the Swift Object Store through the S3 API middleware, which emulates the S3 REST API.
This does n…
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Thanks for creating and maintaining this tool. I have a question about how the model creation works, in order to understand what type of datasets can be used. I was afraid that it might be necessary t…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/bhklab/PDATK
Confirm the following by editing eac…
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Hi,
When looking at e.g. Kidney Renal Clear Cell Carcinoma (TCGA, Nature 2013), the 'Select Genomic Profiles' shows a checkbox for Protein expression Z-scores (RPPA). For Breast Invasive Carcinoma (T…
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I'm seeing an issue related to encoding pop up in the bcbio unit tests, when running inside the Docker images on Quay.
Here's a reproducible example:
```sh
image="quay.io/bcbio/bcbio-rnaseq:1.2…
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@komalsrathi
For the current PNOC008-13, the genomically similar patients constitute PBTA HGGs based on pearson correlation coefficients of expression profiles, right?
For the 15 similar patient…
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Hi Team,
We are getting below error, even though the same geneset_version present in DB as below.
DB_SCHEMA_VERSION, GENESET_VERSION
'2.12.3', '**Bindea_ORIG**'
Error: `geneset_def_vers…
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I have just got FishTaco running on my linux system and it is working correctly with your example data. However I am running into an error with my data. The output:
Given parameters:
{'taxa_abun_f…
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Hi,
I try to use phase=2, just to generate metagenomic data from a abundance profile. However, it didn't go through.
It seems to be aborted quite near the end. The error says:
>....
>201…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/js2264/VplotR
Confirm the following by editing ea…