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The gene `SETD5` is associated with `Mental retardation, autosomal dominant 23`. If I use `intellectual disability`/ `HP:0001249` the phenotype score is 0 (PhenIX and hiPHIVE). The strange thing is th…
visze updated
7 years ago
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Hi,
I recently updated gemini to v0.19.1. I have noticed that when I created a gemini db using the an older version of gemini and vcfanno v0.0.11, I could directly apply inheritance models to them us…
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When I do `bcftools view -i 'MQRankSum="."'`, then this record is printed:
10 67402 . C A 52.98 . ABHom=1;AC=2;AF=1;AN=2;BaseCounts=2,0,0,0;DP=2;Dels=0;ExcessHet=3.0103;FS=0;GC=41.65;HaplotypeS…
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We want to cluster our population into species to encourage inbreeding.
Inbreeding is used to prevent "good ideas" from being killed befor they can develop. If a change in a genome, that will eventual…
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Stuff like this should be cleaned up. It's a relic of version 1.x
``` r
if (truenames) {
X
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When I run jannovar-cli-0.18.jar annotate-vcf , I got some problems.
The exception is:
```
Extending header with INHERITANCE...
Exception in thread "main" java.lang.NullPointerException
at de.c…
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Love the new breeding plan feature, I noticed it seems to just look at pairs and recommend based on if you win all of the stat rolls.
My suggestion would be to keep the current method looking at best…
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Could you add new mechanics?
Priest:Enchant,Brew Potions,holds mass,etc.
Leatherworker: Makes leather things
Miner:Mines and collects lava?
Farmer:Grows Crops and tends animals
Guard:Seeks territory f…
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The path" SAMPLE_INBREEDING=${HOME}/software/angsd-wrapper/iplant/Maize_Inbreeding.indF" in tutorial (https://github.com/mojaveazure/angsd-wrapper/wiki/Tutorial) should be "${HOME}/software/angsd-wrap…
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Hi,
I created a gemini db as follows:
**Commands**:
```
vcfanno -p 4 -base-path $GEMINI_ANNO -lua test.lua test.conf $VCF | bgzip -c > anno.vcf.gz
# this vcf has been decomposed, normalized using …