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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/TrigosTeam/spaSim
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I wonder if it is worth including some additional backward compatibility in the `spatialData()` accessor, as follows.
Current version of accessor:
```
setMethod("spatialData",
"SpatialExper…
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Using the outputs from #4, #5 and #6 we can now create a VisiumIF `SPE` object. Note that we might need to deal with multiple images per capture area in these SPE objects since we'll have different ch…
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It's safer to select the last entry of the `[A-Z]{1}[a-z]{0,1}[0-9]{2,3}` regex call.
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/JEFworks-Lab/STdeconvolve
Confirm the following b…
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One way to do this will be with boxplots for the percent of the spot covered by `pTau` and `Abeta` (separately) for each `BayesSpace` cluster. We'll likely make one page per sample (so PDFs with 10 pa…
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Hi! apparently there is a new dependency, `magick` added. I can't install it on my machine. The usual error:
`1: In .inet_warning(msg) :installation of package ‘magick’ had non-zero exit status`
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Following quantification of the Spatial transcriptomics libraries, we will need to have a second process that imports that output into R as a `SpatialExperiment` and then writes that outputs those obj…
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Following quantification of the spatial transcriptomics libraries with Spaceranger (+/- Alevin-fry) we will need to read in that output data into R as a SpatialExperiment. Especially with the error th…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/DavisLaboratory/ExperimentList
Confirm the follow…