-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/CaluraLab/signifinder
Confirm the following by ed…
-
Hi,
I am trying to reproduce the coronal mouse brain section tutorial https://jef.works/STdeconvolve/visium_10x.html.
If I use exactly the same code as the one shown in that tutorial, I get some…
-
Currently there is an issue where users are getting errors if both SpatialExperiment and Seurat are installed at the same time.
This has been discussed previously in the Seurat repo at https://gith…
-
Hi there. When I run `SPOTlight()`, there is an error that says `Insufficient number of features shared between single-cell and mixture dataset.`. What's the meaning and how can I fix it? Thanks a lot…
-
Hi Luke,
I tried to load a single cell dataset from https://singlecell.broadinstitute.org/single_cell/study/SCP1052/covid-19-lung-autopsy-samples#study-summary, however I get the following error
…
-
Analyses using Slide-seqV2 hippocampus dataset from Cable et al. (2021) and Stickels et al. (2020):
Key analysis steps:
- download raw Slide-seqV2 hippo dataset from Stickels et al. (2020) data re…
-
``` r
library(Seurat)
#> Attaching SeuratObject
library(SeuratData)
#> ── Installed datasets ───────────────────────────────────── SeuratData v0.2.1 ──
#> ✓ stxBrain 0.1.1
#> ───────────────────…
-
Hi @lmweber,
I was trying nnSVG vignette, but I get the following error on this function `qclus
-
Hi,
I know SpatialExperiment class extends the SingleCellExperiment, so I tried to use the writeH5AD function with a SpatialExperiment object. I made up the following function to get the spatialCoo…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/TrigosTeam/spaSim
Confirm the following by editin…