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Hello,
I'm testing Straglr out on some data from targeted sequencing sources. We can find the repeat regions with other repeat measuring programs and by examining the fasta/bam files. However, whe…
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## Source ontology identifier
EFO:0700004
## Destination ontology
HCAO
## Preferred term label
BD Rhapsody Targeted mRNA
## Synonyms
## Textual definition
A BD Biosciences-ba…
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Hi,
I am using a high performance computer to analyze V3-V4 sequences using mothur v.1.46.1 that is available. when running the make.contigs command, the output files are:
stability.scrap.contigs.f…
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For the graded assignment 1, find a simple, stand-alone, static visualization and write a short critique on: How effective is it at what it aims to do? What works well and what doesn't? What could be …
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His next claim is that it is very unlikely that there would be bats naturally living in the metropolitan distict of Wuhan, and in fact no bats were traded at the market at all.
Let us go one step f…
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Is a default `product_max_size` of 2000 really OK? Primer Pooler's default `amp-max` is 220 because that seemed to be the consensus among the biologists I asked. I'm not a biologist, I just talked w…
ssb22 updated
11 months ago
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Hi, we are running arriba and we want to filter the output file to reduce the number of false positive. We are setting this condition for the columns in the output file:
`
split_reads1+split_reads2…
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## Preferred term label
ExSeq
## Synonyms
expansion sequencing
## Textual definition
A spatial transcriptomics assay that involves physically expanding specimens with polymer- and hydro…
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https://mp.weixin.qq.com/s/aKUgc7ZmLOmHXFkFTdMHTA
ixxmu updated
4 months ago
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#### Which new datasets are being added with this release?
CPTAC and HOPE AYA proteomics
CMI (Count Me In) RNA-Seq
Remaining X01 samples
HOPE AYA tumor only DNA
#### What is the sample breakdow…