-
Dear all,
I was wondering how MAF filters affect the p-value distribution. I have RADseq SNP data of a species with very high population structure and I have used a rather low MAF filter (minor all…
-
Får inte upp coverage (alternaivt inte heller calls) för CFAP43
https://scout.scilifelab.se/cust002/F0037468
namnändring har skett av genen påpekas
-
Hi I have an issue while trying to make a regional plot. I just a loaded in a GL-sumstats object of which I already did a ` basic_check()`. Before this I made a normal Manhatta…
-
Hi, how do I retrieve the genotype column ID for `genotype[x].compute()["probs"]`?
Hoeze updated
5 years ago
-
HaplotypeCaller
Call germline SNPs and indels via local re-assembly of haplotypes
Overview
The HaplotypeCaller is capable of calling SNPs and indels simultaneously via local de-novo assembly of haplot…
-
-
Hi,
when I ran the first code, the lumpy-filter removed more than 90% reads of my bam files. Are there something wrong with my original bam file? Is it possible to change the parameters of filtering?…
-
We need to do a better job of differentiating between genes whose variants are causally related to disease and other genes, for instance those whose differential expression has been observed in diseas…
-
### Submitter Name
Andreas Prlić
### Submitter Affiliation
Invitae
### Submitter Github Handle
andreasprlic
### Additional Submitter Details
_No response_
### Which event day would the project…
-
**Describe the bug**
When doing `cg workflow raredisease panel` the command exits with an error regarding the genome build. When genome is not set, it exits with error 'NoneType', when the genome bui…