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Hi,
in the first place thank you for the effort you made with Strelka and for how well it is documented. I know from [here](https://github.com/Illumina/strelka/blob/v2.9.x/docs/userGuide/README.md#…
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Hey,
I'm trying to convert from running HATCHet v0 to HATCHet v1 and I'm running into an issue with the `count_alleles` step. Here's the traceback message. I'm using hatchet 1.0.1 downloaded via b…
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Hi,
I am writing to seek clarification regarding the results I obtained while using the Mutsig2CV software with a MAF file containing 220,000 mutations and 1,900 tumor samples from WES data. By using…
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**Is your feature request related to a problem? Please describe.**
When trying to use snappy & `cubi-tk snappy pull-sheets` functions for projects not related to medical genetics other sampleshee…
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Per discussion between @md and me and feedback from @cband:
Currently, the final somatic MAF contains 279 columns. These are not all necessary, and a few could be omitted or collapsed into single c…
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Hi Team,
I am getting error in running Canvas germline caller.
ERROR:
ERROR: Exception caught in WorkDoerFactory. Cancelling all jobs. Exception:
One or more errors occurred. (One or m…
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As part of the Variant Page effort, we have discussed to start developing the first two widgets (sample data has been shared on slack):
- [x] ClinVar
```
{
"alleleOrigins": [
"germli…
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Output of `segmentrics` resulted in a call with `start` > `end` (`cnvkit==0.9.9`):
Command:
`cnvkit.py segmetrics -s -o --ci --bootstrap 100`
Result:
```
chromosome start end ge…
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Hi,
I had run a MANTA (v1.5.0) as test run for 3 samples GermlineSV calling in HPC cluster by each samples in each node (3samples processed in 3 nodes). After the run-workflow is completed it ha…
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via @hguturu
> re: the other discussion on min-candidate-spanning-count
> Possibility of feature add of applying it at the sample level rather than at the cohort level? Since before the multiple inp…