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laying the keel for the new project.
plugin skeleton, get ABrowse demo data running inside JB2
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**Describe the bug**
When trying yo use the new version version of Jbrowse-cli, I get errors about the commands not existing.
Example when using the command `jbrowse create ./jbrowse`:
```
…
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Until we sandbox or sanitize config callbacks, we need to remove them from saved sessions when they are imported or shared.
Implementation sketch:
* when sharing or exporting a session, scan it …
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# My Quesetion
Gathering system information ...done.
NOTE: Legacy scripts wig-to-json.pl and bam-to-json.pl have been removed from setup. Their functionality has been superseded by add-bam-track.p…
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I ran the functional annotation on my phage genome and there is an issue with the Bacteria and Phage track. Here is a screenshot of the error. It should be a pretty average size genome. Please let…
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Found this during pairing with @elliothershberg while testing the scrolling fix of #1360
Scrolling inside a track is fixed, but scrolling outside still does the unwanted behavior of going back or …
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With this toy MAF file
```
##maf version=1
# maffer
# input=t.gfa
a loops=false
s hg38.chrY 0 13 + 64 CAAATAAG---CTTGG
s other.chrX 0 16 + 58 CAAATAAGGCTCTTGG
a loops=false
s hg38.chrY …
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One specific example we have currently is that `@gmod/jbrowse-plugin-linear-genome-view` package exports `BaseTrack`, `blockBasedTrackModel`, `BlockBasedTrack`, `basicTrackConfigSchemaFactory`, and `b…
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Add a `additionalContextMenuItems` entry to base track config. Callback function signature is:
```
function(feature, track, pluginManager) {
return [ /* array of menu item definitions that will…
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Make a repository with the skeleton of a JB2 plugin that people can fork.
Call it GMOD/jbrowse2-plugin-boilerplate
Also make one or two repos of worked examples of plugins for the BCC2020 plugin…