-
Before we adopt fine tuning into our denoising pipeline, we need a way to automatically check that fine tuning did, in fact decrease the validation loss. According to #388, the validation loss is an a…
-
Dear Micapipe team,
We are running the structural processing workflow in micapipe and run into some issues after a couple of seconds (see code from log file below). It seems as if the T1 scan canno…
-
GPAD "1.2" input:
```
UniProtKB P46934 enables GO:0004842 PMID:17996703 ECO:0000315 20180501 WB part_of(GO:0006511),part_of(GO:0006974),occurs_in(GO:0005634),has_input(UniProtKB:P24928),directly_n…
-
The `qc` subcommand requires an 'auxiliary' folder to exist to work. This folder is intended to be provided by `train`. However, chrombpnet will not allow for this folder to exist due to the usage of …
-
Making this a separate issue bc Dash unit tests will require a lot of development.
We need to integrate some basic unit tests for our QC dashboard into our CI pipeline. Some basic things like test…
-
@AlaaALatif - thinking about this in response to the DL clean up, let's discuss
-
## **Describe the bug**
A clear and concise description of what the problem is.
Thank you for the pipeline,however I am having issues with running the pipeline on an HPC with slurm and singularity.…
-
### To Do List:
- [x] filter the fam file for only eur based on the file of `EUGEI_GROUP_EuroOnly_PCs_NonRefPanel_Dec17.txt`
- [ ] only 794 left
- [ ] the third column of the bim file (Position i…
-
- [x] Write script that generates folder structure to run the access pipeline.
This should consist of the following:
1. Given a project, create the project folder if it exists skip it.
2. …
-
Hello,
I am trying to run the pyInfinityFlow pipeline and want to have all the observations.
It seems with the settings there is no clear option to have all the observations after running the pi…