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Howdy, and thanks for putting this on github, I'm a fan. Appears you've been rewriting commit history, which causes merge conflicts when I try to git pull to get newest changes to code. See http://g…
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Hi,
A question about ClinVar: For variant rs80359880, I get clinvar_sig "untested". However, in clinvar this is annotated as `CLNSIG=1|5`, i.e. with multiple annotations. Right now, GEMINI seems onl…
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I was thinking of porting the documentation to `roxygen2`. Would something like this be within the project goals?
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Maybe instead of unix user, you ask them to give path to the project home dir. For example I don't want things in ~/data I want them in ~/projects/bigd/angsdbigd/ etc. Should make a new directory c…
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After running a set of BAM files from multiple individuals through ANGSD, I'd like to take a closer look at summary statistics calculated by ANGSD for a single (inbred) individual BAM to assess some p…
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> However, the low straying rates in our simulation rate should render this effect minimal except for populations at low abundance.
MMM: I think this point might be worth re-visiting in the discussio…
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I just pulled the newest development branch and packed it with maven. I also used the actual data from the FTP website.
My command:
```
java -Xms5g -Xmx5g -jar exomiser-cli-6.0.0.jar \
--prioritiser…
visze updated
9 years ago
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Hi all,
I am trying to use BCFTOOLS (version: _0.2.0-rc8-10-g7a1041c_) to filter a bcf file but I am running into a couple of problems and I am not sure if I am mis-specifying my filter expressions or…
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I'm a devops engineer, and I'm working on a problem with a deployment of the apis-authorization-server-war. I have no idea whether my developers are using/deploying the WAR as intended, so please excu…
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Hi Brad,
I am trying to use bcbio-nextgen to analysis whole-exome seq data. However, an error stopped the process, the detailed info is:
[2014-09-02 22:42] Finalizing variant calls: C3, freebayes
[2…