-
Hi again,
I thought I'd open up a seperate issue for this to avoid confusion ( https://github.com/ruanjue/wtdbg2/issues/118#issue-456839866). I could use some advice about altering redbean paramete…
-
Hi,
I have rerun Canu for several times but it always gave me this error message:
```
-- BEGIN CORRECTION
--
--
-- Mhap overlap jobs failed, tried 2 times, giving up.
-- job correction/1-…
-
Hi,
I get the following error while running Athena-meta:
============================== check_reads ==============================
--> 0 chunks need to be run. Skipping...
==================…
-
I'm using wtdbg2 v2.3 and v2.4 for assembling ONT and PacBio data (pacbio sequel for 3Gb genome and promethion for 20Gb genome).
I found v2.4 is much slower than v2.3, when I try to assemble large se…
-
Hi Sebastian,
I'm having a problem with perl dependencies (I know this is not the fault of your code). Do you have any idea how to resolve this? We're excited to try this out.
```
$ cpanm Math:…
-
conda create --name myenv -c bioconda slamdunk
conda install -c bioconda/label/cf201901 slamdunk
Neither seems to work.
Install with pip seems to give a nonfunctional version based on the follo…
-
Hi there,
I'm trying to use canu to assemble a funny marine worm, which I know is a.) pretty heterozygous and b.) contains within the library some interesting bacterial reads (possibly its microbio…
-
Hi Jue,
I'm trying to assemble a genome using wtdbg2 with default parameters. I've run two kinds of assembling, one only using wtdbg2 with raw sequel reads, and one using CANU first to get correcte…
-
Hi Jue,
When I run wtdbg it plots the kmer distribution and suggest that in case of a "not good" distribution I should adjust the -k, -p and -K parameters.
The kmer distribution would depend on many…
-
Hi Kamil, I have troubles understanding my smudgeplot. I have used the following command to generate it
```
ls $folder/reads/*.fastq > $folder/FILES
srun kmc -k21 -t$threads -m64 -ci1 -cs10000 @F…