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Hi!
Thank you for your great work! I have a question that whether I can download a pre-generated database and manually generate a fasta file containing all protein names and corresponding foldseek …
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Dear Rosetta team,
I amt rying to predict Protein structures with short poly-U RNAs to identify putative RNA binding sites in proteins. However, the program fails because no database hits are fou…
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Dear all,
I know this topic has been addressed but I cannot make it right.. I need to merge to custom made a3m files of an heterodimer to run colabfold_batch in multimer mode.
What I tried is a…
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Hi,
Thank you very much for developing this tool!
I find some regions motif edit distance is too large:
`chr1 7105232 7105273 GAGCTGG,GAGCCAA,GGGCTGG,GAGCTGC,GAGCTCT,GAGCTG`
"GAGCTGG","GAGCCAA"…
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downloaded nr DB properly, parsed sequences, masked low diversity all good but when building the database I get the following:
kraken2-build --build --db nr-ncbi/ --threads 80
Creating sequence…
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Hello Kraken team,
I am analysing shotgun data using Kraken2. So I built only protist database using refseq genomes from NCBI. I used different confidence levels (0 to 0.7) and increased --minimum-…
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Hi Joe, I am trying to use the script to assign taxonomy to some 18S sequences. For this, I have generated my own blast database from a blast search of first 10 hits for each of my sequences and tax f…
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I get this error when running `m.Drop()`:
`table sqlite_sequence may not be dropped in line 0: DROP TABLE sqlite_sequence in line 0: DROP TABLE sqlite_sequence`
``` go
package main
import (
…
LeonB updated
7 years ago
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Hi David,
I'm using Orthofinder to analyze 19 species, and the mission is stuck. The supercomputer I rented has been running for a dozen days and still hasn't run 19 species. The commands I use are a…
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- Visited https://loopback.io/doc/en/lb4/todo-list-tutorial-sqldb.html - #link1
-Visited https://loopback.io/doc/en/lb4/MySQL-connector.html - #link2
## Steps to reproduce
1. Intstall @loopbac…