-
Dear Dr. Zhou,
I find website `pheweb.sph.umich.edu` can not be accessed. Can you make a check to the server? another question is I am wondering is there any links to download the summary statisti…
-
I was trying to read the same UK Biobank data using plink converted binary files and from official `.bgen` files separately, and I was expecting identical results. However, I got completely opposite r…
-
Dear Dr. Zhou,
I am wondering how to estimate the cost for each GWAS in AWS with UKBB (500K array data or 50K WES data). Did you have any estimation before since you already have UKB-SAIGE-PheWAS.…
-
This module would invoke 'cache_erase' on input files, once a task is complete, using a new specification in the descriptor:
```json
"custom": {
"cbrain:integrator_modules": {
"BoutiquesIn…
-
Hi,
I am creating a sparse GRM for UKB 200K WES data. Because this step need rare variants for random sampling, all 12M exome variants are included. The plink bed file is about 600GB. How much memory…
-
ch-kr updated
2 years ago
-
Include data from the public early release of UK biobank gwas:
RAPID GWAS OF THOUSANDS OF PHENOTYPES FOR 337,000 SAMPLES IN THE UK BIOBANK
http://www.nealelab.is/blog/2017/7/19/rapid-gwas-of-thousa…
-
Hi,
I've been using previous version of SAIGE (v0.44.6.5), and it didn't allow ``--nThreads`` in the second step, giving the following error:
```
--nThreads is invalid for the second step. It onl…
ofrei updated
2 years ago
-
Hi there,
I wonder if you can help with an error I am getting using PRSice 2.3.1.e, which I think is to do with using --keep. I have used the exact same script on the full sample with no errors, b…
-
I am unable to download the UK Biobank genetic correlation results available via the "Download Results" link located here: [https://ukbb-rg.hail.is/](https://ukbb-rg.hail.is/). When I try to access th…