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chromosome organzation is linked through is_a
histone H4-R3 methylation
histone H3-S10 phosphorylation
histone H4-K8 acetylation
which seems incorrrect. The problem may be at
chromatin modification
…
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Hi,
This is Nick Stover at the Tetrahymena thermophila Genome
Database. Tetrahymena is a unicellular ciliated protozoan (ciliate).
Like nearly all ciliates, T. thermophila has two types of nuclei…
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As per reasons #785 there is a need for node groups to have dynamic properties.
The way to do this is via dynamic node classes registered as needed in runtime.
The basic implementation is in [dynam…
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Hi,
I found CIRCexplore a very useful tool for detecting circRNA from RNA-seq. I am interested in detecting circRNA which completely falls in intron (=lariat sequence). I mapped the paired-end reads …
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Hi Guangchuan,
if you can test this:
``` r
library(ChIPseeker)
library(TxDb.Hsapiens.UCSC.hg19.knownGene)
txdb
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Should there be children for the different kinds of viral genomes?
- circular ssDNA
- circular dsDNA
- linear dsDNA
- dsRNA
- plus strand RNA
- minus strand RNA
- retroviral (the only one that already…
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I have assembled a repeat library for my organism from de novo assembly of reads as well as with RepeatScout. Many can be identified at the level of order by structural features, but have no/ambiguous…
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The humanmine build failed because of duplicate genes in the data file:
```
/data/human/identifiers/current $ grep ENSG00000269911 humangeneidentifiers.tsv
FAM226A 28544 203429 ENSG00000269911 …
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**Reported by eilbeck on 2008-10-28 21:14 UTC**
Hello everybody,
I am considering using the OBO ontology synonyms as a dictionary for
text mining. However, since the SO uses underscores for the main …
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GO:0006606 protein import into nucleus
is a child of
GO:0044743 intracellular protein transmembrane import
but nucleocytoplasmic transport isn't "transmembrane" (the directed movement of proteins ac…