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Hello,
I'm trying to write a workflow that executes the following logic:
1. If `method == "minhash"`, run `sourmash.CompareFastqs`
2. Else If `molecule == "protein"` --> fail because only sourmas…
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Hello,
A few more of us at Biohub are using reflow at once and I'm starting to see this error:
```
reflow: assoc store stderr: ProvisionedThroughputExceededException: The level of configured pr…
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I'm having trying getting ABYSS-P to build with MPI support. We use module files on our HPC to load openmpi. Here is what I am doing:
```bash
$ export CXX=mpic++
$ export CC=mpicc
$ module load …
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Hi, I am trying to assembly virus genome (max length 10000 bp) but flye keeps reporting no overlaps found. Could you please help me?
Log file:
[2019-05-24 14:51:08] root: INFO: Starting Flye 2.4.2…
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Hello,
I'd like for a program to accept as input either a directory or a list of files. Right now, I wrote two separate files but they differ so trivially (diff below) that it seems ridiculous to hav…
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Hi,
I am running wtdbg2 on a 1.4G plant genome. We have about 100x Pacbio Sequel data. I use the default settings : wtdbg2 -x sq -t 0 -i *.gz -fo rheum, and get the following output:
Seems tha…
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Can the kmers corresponding to a partition be recovered?
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Hi,
Do you recommend to do denoising Illumina reads e.g. with any of [khmer](https://khmer-recipes.readthedocs.io/en/latest/) recipes or any other tool?
Thank you in advance,
Michal
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Hi, jue!
I am assembling a ~4.9Gplant genome by 21X pacbio RSII data(N50 11.2kb and average length 8.1kb). I don't want to get a good assembly but many long nice contigs which can cover as many genes…
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Hello I'm trying to run nanofilt and after running simulation.py I get the following error message :
`File "~/soft/nanosim/src/simulator.py", line 739, in
main()
File "~/soft/nanosim/src/…