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Hi NCBI Datasets team,
Today I've tried a couple geolocations with the `--geo-location` flag and have run into the `invalid zip archive` error every time.
My attempt with state level "WA"
`…
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Hello,
I am working on designing a new UCE probe set. Two of my genome files are quite big (8.3 and 8.6 G), so when I try to align the temporary probe set against them I get the error:
IOError: …
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Hi !
I am trying to compare a large gene cluster between two non-annotated genomes.
To do that, I first generated gff3 files for genes in a particular region of these two genomes. I then transfo…
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Unlike NucleotideDisplay and RepeatMap, HighlightDisplay takes up linearly more
processing time proportional to the size of the sequence. It does not have any performance
optimization for large …
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Hi,
I've noticed that Sibeliaz creates a very large number of small files in the "alignment" folder while running. I saw about 1.7 million files generated for 3 genomes (sizes 400, 500 and 1000 Mb…
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Large genome / metagenome could generate very huge assembly graph. We need to see how to load them properly.
Few ideas straight from the head:
* Switch to GFA parser from https://github.com/lh3/…
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## Describe the bug
The Samples tab in the Cohort Browser is returning a meaningless (to me) string rather than interpretable content
## To Reproduce
Go to http://bioinfo.hpc.cam.ac.uk/web-apps/i…
pamag updated
2 years ago
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Based on https://github.com/galaxy-genome-annotation/python-apollo/issues/40, I'd like to update the Create Or Update Organism tool to make use of the returnAllOrganism paramter in the add_organism ca…
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I am attempting to align a draft genome with a related reference species using mummer4. I've successfully tested the installation on partial chromosomes but receive this error when I try anything larg…
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```
What steps will reproduce the problem?
1. running orthAgogue on a large (20 Gb) blast output file
What is the expected output? What do you see instead?
the expected output is the default orthAgog…