-
Hello, thanks for this tool. I was wondering if the contamination correction will still work if we normalized with SCTransform v2 instead of log norm/scale?
-
I am trying to analyze the TCGA –LIHC dataset for DEGs but when I get to the data normalization, it says that it is not found
`>dataNorm
-
I'm trying to normalize AML data with STAR counts but I got error message in the following:
# normalization of genes
dataNorm
-
**`preprocessing`**
- [x] Implement function to add pseudocounts
**`phenoscore`**
- [x] #25
- [x] #71
- [x] #80
- [x] #85
- [x] #17
- [x] #87
- [x] #16
- [ ] Compare sequencing count …
-
I am in the process of reading through @sadamov's PR #54 on using zarr-based datasets in `neural-lam` and I am going to use this issue to write down some notes. Everyone is free to read-along, but thi…
-
Normalization should be done on the C++ side (if any, my vectors come out from my models already normalised).
If not every time the C++ code is used by another programming languages (i.e. nodejs) nor…
-
Hello, your published work is very exciting. If possible, I would like to consult you on the following questions:
1. Regarding the use of TIGRE for DRR data generation. In the process of creating D…
bjy12 updated
3 weeks ago
-
Hi
Thanks very much for the shared package.
I have been trying to analyse the data by using it, but got some questions and hope can get some help from your side.
I tried to use either TSS norma…
-
I am doing covariates selection analysis before the DE. Since this analysis should use the same normalization method with the actual DE analysis and NEBULA takes in the raw data, I am wondering what …
-
Voici ce qu'il me semble correspondait à cette normalisation (extrait du manuel de BrB Array Tools) :
> **Normalization by reference array**
>
> This normalization method is a combination of “Median…