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Hi,
I think the installation went fine, but the test run fails (attached the log file), I don't understand where the problem is.
Thanks a lot for your help.
Best
Francesco
[log.txt](https://…
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Doing some QC on the imports, I realized that WB (and others) have annotations to other children of 'binding' (GO:0005488) that use the IPI (ECO:0000353) evidence code and contain an entry in the With…
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Hi,
I'm running microbeannotator v2.0.5 installed via conda:
`microbeannotator -i prot.fasta -o results -d /software/microbeannotator/database -m sword -t 50 --refine --full `
and get the fol…
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Hello,
I have been investigating some odd results for an OrthoFinder run using NCBI data and new annotations from about 15 species of ducks and other fowl, and I think that I have found a bug in th…
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**UniProt UniRule (ID and label):**
UR000376192
**Sequences with problematic annotation (ID + gene/protein name):**
mapping https://www.pombase.org/gene/SPBC337.15c (coq7)
**Description …
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Hi I installed the package inside my miniconda and I am working in the (ms proteomics) environment within the cd of my report.tsv from DIA-NN.
However
(msproteomics) (msproteomics) PS D:\Data\Dom…
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In b6b9d534da028509, my protein binding phenotype annotation demanded both two assayed proteins AND two assayed isoforms, because the configuration file has (well, had) cardinality 2 for both entries.…
mah11 updated
8 years ago
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Right now there are 155 database cross-references in UniProt:
- http://www.uniprot.org/database/
I want to discuss here
- [ ] which ones are essential
- [ ] a reasonable, flexible model for cross-ref…
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Pombase
https://www.pombase.org/term/GO:0141164 0
Move these down?
https://www.pombase.org/results/from/id/3241f766-e918-482a-bebe-3e9752adfa45
I will ask SGD to make these more specific
SGD…
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Hi, thank you for this approach, absolutely fascinating! I'm hoping to use this in a workflow to assess and triage eukaryotic genome annotations using FoldSeek. The range of protein sequences can be s…