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BigWig format is used for, for example, storing phastCons score in UCSC and read coverage of RNA-seq and ChIP-seq data.
Currently, there exist several bioinformatic tools for manipulating bigWig fi…
yuifu updated
7 years ago
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Hi Dear Developer,
I'm trying to query tabix file with igv.js with index .tbi file located at same URL, but seems the new instance of FeatureSource will still depend on igv.browser object. is that po…
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It would be more convenient if all the track data could be stored as standalone direct access files, like the BAM, BigWig, and VCF tracks are currently stored. GFF3/2 and BED files could be stored as …
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I would like to visualize the gff3 outputs using the Apollo Genome Viewer and attempted to convert the files using the flatfile-to-json.pl script from JBrowse.
Unfortunately, this does not work pr…
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In the README, an ENCODE bigBed file is opened. On Linux, I'm able to run the command as written:
```
>>> import pyBigWig
>>> bb = pyBigWig.open("https://www.encodeproject.org/files/ENCFF001JBR/@@…
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From jayhesselberth/bigwrig.
Can directly access local bigwig files, but URL access is not working
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I have bigbed files that work, but when I try to produce uncompressed bed files, I get :
Uncaught RangeError: byte length of Int16Array should be a multiple of 2
at new Int16Array (nativ…
max-l updated
7 years ago
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Hello,
Tied in to ticket #11, would it be possible for libBigWig to read BigBeds?
Hopefully, it should not be too painful: the search tree / compression block structure is identical, only the c…
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Just trying to install `higlass-server`
Here are my steps so far:
```
mkdir -p ~/work/github.com/hms-dbmi
cd ~/work/github.com/hms-dbmi
git clone git@github.com:hms-dbmi/higlass-server.git
…
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it would eventually be nice to have code that takes adjusted coverage, derfinder results, and the genome-wide F-statistic used to find the DERs, and automatically create a UCSC Track Hub. Other inputs…