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Initial Request
Add the term "microbiome" to the Examined_Detected code table to aid in the migration of legacy data.
_Proposed Value:
microbiome
_Proposed Definition:
The microbiome is a co…
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https://www.ncbi.nlm.nih.gov/pubmed/31076212
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https://pubmed.ncbi.nlm.nih.gov/32071266/
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Dear iMGMC developers,
Thanks for developing this amazing tool.
I was wondering if I could use iMGMC tool/data in order to assign 16S V4 ASV against a reduced, mice-specific microbiota database. …
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Dear EasyMicrobiome development team,
I already downloaded the source code of EasyMicrobiome v1.16 (2022.8). I want to visualise the kraken+bracken output using the script **EasyMicrobiome/script/t…
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Hi,
Adding a function for clustering rowData (of a TreeSe object, e.g. taxonomic, metabolomic.. data) could be useful in analysis. For instance, performing hierarchical clustering on rowData based …
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Hi all,
I wish to compare my sequencing results of stool samples with the data available in the Human Microbiome Project. What I want to do is to calculate Unifrac distance between all the samples an…
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Dear developers,
Thank you for this tool!
I was wondering if there is an example file for using the `patway_annotation` function in the following case:
```
# Use case 1: Annotating pathway inf…
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https://github.com/FredHutch/Galeano-Nino-Bullman-Intratumoral-Microbiota_2022/blob/d72ffa3efbc5dd67d8697ce84611020fe316fa8b/10X_Visium_samples/validate_and_count.py#L13
I just run the code in **val…
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Ordination plots can be complemented with trajectories over points when time series are available for some or all subjects, other entities. It is not yet clear whether this would deserve its own funct…