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FredHutch
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Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
MIT License
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FASTQ header mismatch detected
#23
StackChan
opened
2 weeks ago
0
Is the AWS files in this repository still available?
#22
StackChan
opened
3 weeks ago
0
Question for INVADEseq.py about the dictory of genus.
#21
yang050036
opened
2 months ago
0
Visium fastqs clarification
#20
trus-uic
closed
6 months ago
1
detection of microbial reads on 10X Visium slides
#19
ftencaten
opened
9 months ago
0
error for gatk PathSeqPipelineSpark "java: bwa.c:329: bwa_mem2idx: Assertion `k == l_mem' failed."
#18
leogg738
closed
10 months ago
1
Sample name in `headneck_gex_16s_mix_dedup.csv`
#17
tmaruy
closed
11 months ago
5
Running for Part2. 10X single cell data
#16
hibiscuslee
closed
1 year ago
1
Downloaded INVADEseq data not work for cellranger
#15
oyxf
closed
1 year ago
5
Visium QC filtering - Mitochondrial content
#14
cathalgking
closed
1 year ago
1
Running for Part1.10x Visium spatial transcriptomic data
#13
februaryfang
closed
1 year ago
3
File info
#12
AnnaAntonatouPap
closed
1 year ago
12
Doubts about the SRA ID
#11
februaryfang
closed
1 year ago
4
pathseq bam is missing reads in the literature
#10
jr-ran
closed
1 year ago
11
Requestion about Coordinate Information
#9
yunbokai
closed
1 year ago
1
Running for Part2. 10X single cell data
#8
ChoiJi-Hye
closed
1 year ago
1
Running pipeline for non-Visium data
#7
AnnaAntonatouPap
closed
1 year ago
3
Availability of Seurat objs
#6
MathiniVaikunthan
closed
1 year ago
1
GATK pathseq
#5
zhangshuyue1
closed
1 year ago
1
GATK pathseq
#4
zhangshuyue1
closed
1 year ago
1
The spatial coordinates of 10X Visium samples
#3
jiwoongbio
closed
1 year ago
1
cannot find my_sample.visium.raw_matrix.genus.csv
#2
NicolaasVanRenne
closed
1 year ago
11
A issue in validate_and_count.py
#1
TequilaSunrise84
closed
1 year ago
6