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**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.2.5
- OS name and version (`lsb_release -ds`): "CentOS Linux release 7.9.2009 (Core)"
**To Reproduce**
Exact bcbio command you…
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```
I have been using STAR with Illumina 101bp paired end reads. The first set of
libraries I sequenced work great going through the pipeline, but I have had a
very strange problem with the most rec…
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Hi @kkdey,
I have following questions on GSSG pipeline. It is great if I can hear when you have a chance.
1. Regarding the generation of gene program .txt file from .csv. https://github.com/kkde…
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Hello, I'm trying to use the process of cisdynet. However, the following error message appears.
WorkflowError in line 25 of /data/DATAprocess/licg/software/cisDynet_snakemake/atacqc/cisDynet_snakem…
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the command:
`bash arc-validate.sh -p /arc/cmqtl_val1_arc -v` inside the docker container gives me this error message
```
+ arc-validate -p /arc/cmqtl_val1_arc -v
Internal Error: …
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Hi,
I am having an issue when pipelining multiple samples with snakemake. It appears that funannotate (e.g. clean) uses the current working directory to store temporary files. These get overwritten…
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I've been trying to run RSEM using STAR as aligner to quantify transcripts in a 30X human sample and I have encountered that the following error:
```
EXITING because of fatal error: buffer size for …
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### Description of feature
I think it would be nice to include the demux samplesheet that is used as input for bcl2fastq, bclconvert etc. into the flowcell output folder for posteriority. The input s…
grst updated
2 months ago
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9de029f9d00e2957e001042724053c9fbbfbe400
[Progress Report](https://github.com/STAT540-UBC/team_Undecided/blob/master/progress_report.md)
@ppavlidis @singha53 @farnushfarhadi @santina
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Hello!
I'm trying to run a bulk RNA-seq analysis using the following template:
```
# Template for human RNA-seq using Illumina prepared samples
---
details:
- analysis: RNA-seq
genome…