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I'm excited about this tool. Thank you for making it! I have a three questions/comments:
1) I don't get an html file, and the error below seems to be from an attempt at report rendering. Do you ha…
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Hi,
I tried to search some terms from NCBITAXON (e.g. https://www.ebi.ac.uk/ols/search?q=Bacillus+sp.+du-106&ontology=ncbitaxon )
it shows 404 Error.
Ontology Lookup Service
Something went …
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Hey @Adoni5, I hope you are doing well. I have a basic question regarding weight distribution. Please forgive me if I understand it incorrectly.
As you mentioned in the Readme that it basically gives…
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* **GO term ID and label for which you request a new superclass**
GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
GO:0090563 protein-phosphocysteine-sugar phosphotransf…
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Dear Chi,
I have some doubts about applying the merge function of microeco. If it collapses or combines all ASVs/OTUs into genera (for example), I would expect the row.names of the "OTU table" to be …
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Trying to run CAMISIM to generate a very small test metagenome data set with a mixture of eukaryotic and prokaryotic genomes to test a pipeline with, following the example in the usage guide. I am get…
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Hi
I have tried the web server at https://branchwater.jgi.doe.gov/ many times over the last few days and I have not gotten any results from any of the tries. I did the search using the E. coli K12…
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The function which connects spot (fluorescence) data to mesh (segmentation) data from 2 different sources, is giving out an error. This can cause errors in:
`spotsInBox()`
`objectsInBox()`
`creat…
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Hi hi,
As discussed in the meeting, here are some issues identified while teaching the BMZ (please feel free to modify or add more things):
- Searching engine: it works well suggesting existing t…
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Do prokaryotes have cell types?
Currently only 3 classes
- 'prokaryotic cell'
- 'actinomycete-type spore'
- endospore
- heterocyst
heterocysts are cool.. from https://www.ncbi.…