-
Can we drop the bigBed annotations names? For example, `peak_983939`. Or could there be a new flag to toggle these labels on or off?
-
Hi Team,
I noticed that there is a huge differences between rmsk.bigBed and GCF_009914755.1_T2T-CHM13v2.0_rm.out as shown below:
5,586,304 rmsk.bed (converted from rmsk.bigBed using bigBedTob…
-
I was not able to find the expected input files for construction of the assembly.
(https://hgdownload.soe.ucsc.edu/gbdb/hs1/ does not seem to have ncbiRefSeqCurated.txt.gz, chromInfo.txt.gz, cytoB…
-
The VariantTrack feature details fields are specialized so you can mouseover a field and it will tell you what it is in a tooltip. This helps with understanding unfamiliar field names
VCF has a hea…
-
I thought I could use this library for querying extremely large BigWig files, but despite providing python with 300 GB of ram it crashes anyway.
Is pyBigWig keeping all the data in memory at any poin…
-
We already support bigBed. Adding support for bigWig shouldn't be hard.
danvk updated
8 years ago
-
IO read/write functions should be separated from the actual GRS. This will mean extracting all ```read_bed```, ```write_bed``` etc functions and putting them into Format classes that will take a GRS a…
-
-
1. The first time I tried to run this, I got `Couldn't open /galaxy-central/tool-data/shared/ucsc/chrom/hg19.len`. As it turns out, there was no folder `/galaxy-central/tool-data/shared/ucsc/chrom/`. …
-
Hi, @cmdcolin
This plugin looks awesome! I am interested in presenting these variation from whole genome alignment for A.thaliana genomes.
`maf2bed` looks fine, but the jbrowser seems stuck for t…
baozg updated
5 months ago