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I think we omitted slot `size_frac` from the DH interfaces for soil samples. I also think I had been including them in the initial DH interfaces for all other environmental packages, but then it seems…
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The current code is too restrictive, leading us to miss out on some bubbles due to the end and/or start nodes already being tagged in a chain.
Use case: component 75 of the first biofilm graph, con…
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Hi,
I was wondering if there are any available tables to link the SRA library names(i.e. P_12_8_0X_C, B_12_1_4X_Im_2) to the sample condition(i.e. time point, treatment)? Thank you!
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OMP:0005116 and OMP:0007006 seem to be redundant. Debby suggests deleting OMP:0005116.
OMP:0007006 ! cell population phenotype
def: A microbial phenotype where the phenotype is observed at the level …
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Approval for studies is requested per prep and the prohibition applicable to env_package should be applied only to the set/subset of samples in the prep where approval is being requested not to the en…
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Hello,
I am currently struggling with metagenomes obtained from environmental biofilms (river rocks). I have 50 metagenomes but I obtain only 100 checkV high-quality viruses. I would expect a lot m…
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This should be done as a pre-processing step, part of overall ETL pipeline, such that each individual analysis does not need to do normalization
Currently done for water packages here:
https://nbv…
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same format as elements in misc and sediment packages
**New term details**
For us to assess a new term request we require the following details:
```
Term name -
Structured comment name - [a le…
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Integrating respiratory microbiome and host immune response through machine learning for respiratory tract infection diagnosis – Hongbin Chen – npj Biofilms and Microbiomes
https://www.nature.com/art…
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As it currently stands:
``` javascript
/**
* \brief Models a mechanical interaction between two located agents. Implemented by extending classes (LocatedAgent)
*
* Models a mechanical…