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Hey,
I am trying to import a .ics / .ids file, which has 2 spatial and a temporal dimension (2d + t).
Right now I am doing this by iterating through every point in time using a for loop ```img = bio…
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Hi,
nd2reader is having trouble reading a file as it finds "Zs" that are not there.
Image was acquired with triggered imaging
1 Z, 120T, 2044 Y, 2048 X, 24 Visit Points.
pims_nd2readerSDK and…
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I was trying to use Bioformats reader but I getting the following error:
reader = pims.bioformats.BioformatsReader(file)
File "C:\ProgramData\Anaconda3\lib\site-packages\pims\bioformats.py…
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## 🐛 Bug
## To Reproduce
Steps to reproduce the behavior:
![Capture](https://github.com/stjude/punctatools/assets/71860103/46797c16-67f9-4b4d-9c63-c4960d29c1c7)
1.
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## Expe…
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Hi Artur,
Great work with this package! I was trying it today (Dev branch) for some of my Xenium data and noticed that I get a Java heap space issue.
I solved it using ```options(java.parameters…
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Hi everyone!
First of all: Great and very much appreciated bioformats wrapper!
I encountered the following issue:
My aim is to filter my images based on the channel. The images were acquired…
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I am trying to call some methods in python package `python-bioformats` that uses `javabridge` to call a java lib called `Bioformats`.
When I call one of those methods, it returns following.
``
…
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Make OME-TIFF, .ND2, and CZI importation more robust.
Deployment of latest bioformats library ?
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Hi,
I am currently trying to use bioformats (and python bioformats) to read some CZI files generated by a Z.1 lightsheet. The series is a tiled imaging of a single channel and was done with a dual …
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Tiling images using bfconvert:
```
bfconvert /tmp/source.tif /tmp/test/prefix_X%xY%y_Z%z_T%t_C%c.ome.tiff -tilex 1024 -tiley 1024 -option ometiff.companion prefix.companion.ome
```
generate inco…