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Dear developers,
I've already successfully run the full m6anet pipeline (version 2.0.1) on a given dRNA-Seq dataset, but now am experiencing the following error during the dataprep step on a differ…
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* [ ] Remove any unnecessary commented-out code
* [ ] Standardize variable names
* [ ] Collect related variables into collections (dictionaries) eg. collect file paths into a `paths` dict.
* [ ] Do…
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In the _Datasets_ section, it is stated that we use b37 in NEXT Bioinformatics, but at MOMA we use hg19. Unfortunately, while the two are very similar, that are [not 100% identical](http://gatkforums.…
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Hi,
Thanks for your awesome pipeline, which is a very useful and user-friendly especially for those just starting out in bioinformatics. Could you please tell if you plan to add the ability to use no…
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Hi Sam
I think it would be helpful if the "well stacked set of bioinformatics blocks" could be supported with an overview figure of what happens in the pipeline 😄 . e.g.
![image](https://user-image…
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## Input specifications
To skip the qc and assembly step we can provide the assemblies and reads used to generate the assemblies in a CSV file together with a CSV file specifying the reads.
The asse…
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Hello,
I am developing a bioinformatics software pipeline that goes by the initialism CAT (Comparative Annotation Toolkit) - https://github.com/ComparativeGenomicsToolkit/Comparative-Annotation-Too…
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Session that need to be checked by someone other than their main author:
- [x] #1 R Fundamentals
- [x] #2 Data manipulation
- [x] #3 Linear models
- [ ] #4 Visualisation
- [ ] #5 Best Practice
…
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The workflow seems to fail quickly on the IRIDA web application side and the Galaxy log suggests staramr is failing due to a problem executing tool: dataset_collections:
`There was a failure execu…
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Hi Jin,
I'm looking for the right value of a platform parameter to be specified to init Caper on my HPC (Mount Sinai). My HPC uses the LSF system. I'm referring to section 2.3 of this manual - http…
ls233 updated
2 years ago