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The Bioregistry has had a prefix for EMPIAR (https://bioregistry.io/registry/empiar) for a while - it appear this was recently added to Identifiers.org, but curated in a different way that causes issu…
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# Discussions and Follow-ups from Biocuration 2024 | Biopragmatics
I’ve just returned from the 17th Annual International Biocuration Conference at the Indian Biological Data Centre (IBDC) in Faridaba…
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I just skimmed https://arxiv.org/abs/2404.03044 and have two suggestions:
1. might be worth mentioning the overlaps with the Intelligent Task ontology https://bioregistry.io/registry/ito
2. we pre…
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We frequently use these methods:
- curify_table: all/selected columns with IRIs should be replaced by curies
- irify_table: all/selected columns with curies should be replaced by IRIs
- uri_to_cu…
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bioregistry functions technically as a resolver for prefixes for any scientified or non-scientific domain; in fact many of the prefixes are not bio-specific.
However, for bioregistry to function *s…
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I've been asked to provide feedback on OMIM changing its CURIEs to "MIM".
Looking at the primary GO upstream data (GAFs and GPADs), there does not appear to be any OMIM data that would need to be c…
kltm updated
5 months ago
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How to run in a mode that ignores Permissible value standard_naming?
```shell
linkml-lint src/schema/nmdc.yaml | grep -v 'Permissible value of Enum.*(standard_naming)'
```
I think we can ign…
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Current entry:
```yaml
- database: MEROPS
name: MEROPS peptidase database
generic_urls:
- https://www.ebi.ac.uk/merops/
entity_types:
- type_name: protein
type_id: PR:000…
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(lmk if you prefer these in pyobo vs here)
The correct ID to use for grouping class is something like "EC:1.1.1.-", not "EC:1.1.1"
See:
https://github.com/biopragmatics/bioregistry/issues/681
…
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After lots of careful curation, there are only four resources listed in this repository that I can't quite figure out
| datasource_name | system_code | website_url | l…