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Hi,
I have got the below error when attempting to use gbtools to generate a GC-coverage plot. Any help here would be appreciated
```
library(gbtools)
d
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Hello there!
I successfully installed the current version of blobtools[full] using pip, and while I can get some functions to work, there are others that can't because of some incompatibility issu…
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IPA produces:
- `*.purged.haplotigs.fasta`
- `*.purged.primary.fasta`
HiFi asm produces:
- `*.bp.hap1.p_ctg.{fasta,gfa}`
- `*.bp.hap2.p_ctg.{fasta,gfa}`
- `*.bp.p_ctg.{fasta,gfa}`
- `*.bp.p_u…
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Hi, I am producing an assembly for my species and I wanted to explore my dtaa with snailplots and contamination plots. I tried installing blobtools2 on my mac (macos 13.1), but encountered quite a few…
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I am currently cleaning my transcriptomic data using blobtools. As described in manual I used blast nt and Uniprot database hits.
Can I add nr blast hits to create a blobdir. If yes, do I need to run…
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singularity exec /home/aicampos/miniconda3/envs/Culebront/lib/python3.10/sitepackages/culebrONT/containers/Singularity.culebront_tools.sif circlator all
Traceback (most recent call last):
File "…
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Hello,
I have created a BlobDir and have previously been able to access the viewer without any problems. Now every time I try to do this I get the following error in the browser:
Unable to connect…
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Hi
make-blobs.py ends with this:
[ERROR] : BLAST output does not seem to be in the right format ('6 qseqid staxids bitscore ... ')
Here is my blast command:
ncbi-blast-2.2.31+/bin/blastn -task meg…
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**Is your feature request related to a problem? Please describe.**
Embeddable views of Cell Ranger HTML summary page on GigaDB. Cell Ranger is a set of analysis pipelines developed by 10X Genomics th…
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I'm unable to build using docker:
```
erik@copito [01:10:50 PM] [~/blobtools] [master]
-> % docker build -t drl/blobtools .
```
This crashes and burns:
```
Collecting package metadata (r…