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Hi
make-blobs.py ends with this:
[ERROR] : BLAST output does not seem to be in the right format ('6 qseqid staxids bitscore ... ')
Here is my blast command:
ncbi-blast-2.2.31+/bin/blastn -task meg…
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I'm unable to build using docker:
```
erik@copito [01:10:50 PM] [~/blobtools] [master]
-> % docker build -t drl/blobtools .
```
This crashes and burns:
```
Collecting package metadata (r…
ekg updated
12 months ago
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Hello,
Thanks for blobTools, it's a really wonderful piece of software. I'm using the bamfilter module to extract all sequences mapping to contigs of a particular taxon and though the original sequen…
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Hi,
I have tried the add taxonomy step multiple different ways and it doesn't seem to work, even though no errors are reported.
`blobtools add --hits Coemansia_sp._RSA_376.ncbi.blastn.out --hits…
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I am currently cleaning my transcriptomic data using blobtools. As described in manual I used blast nt and Uniprot database hits.
Can I add nr blast hits to create a blobdir. If yes, do I need to run…
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Hello!
I have used diamond to obtain hits with public databases and then filtered my data using Blobtools. I have used the commands specified on your webpage (https://blobtoolkit.genomehubs.org/blo…
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Hello,
I'm trying to create a Diamond reference database for the Uniprot reference proteomes, but the instructions I found for the older version of BlobTools (https://blobtools.readme.io/docs/taxon…
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Hello there!
I successfully installed the current version of blobtools[full] using pip, and while I can get some functions to work, there are others that can't because of some incompatibility issu…
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Hi @rjchallis @epaule,
I have problem with loading mapping data and vizualization in bloobtools. My command was - ./blobtools2/blobtools add --cov ~/Desktop/bioinformatics/K17_4_S9_L1L2_R1.fastq.gz…
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IPA produces:
- `*.purged.haplotigs.fasta`
- `*.purged.primary.fasta`
HiFi asm produces:
- `*.bp.hap1.p_ctg.{fasta,gfa}`
- `*.bp.hap2.p_ctg.{fasta,gfa}`
- `*.bp.p_ctg.{fasta,gfa}`
- `*.bp.p_u…