-
**Describe the issue or bug**
```python
import rpy2
import rpy2.robjects
```
yields the message
`R_HOME must be set in the environment or Registry`
and the Python interpreter quits with e…
-
A single cell dataset has A cell, and a single cell dataset has B cells. After batch integration of the two, can cellphonedb be used to analyze the interaction between A cells and B cells? Specificall…
-
Hi,
When I try to use the path as an input, my command is
`cellphonedb method statistical_analysis /Users/tangsuiyue/Documents/Documents/Project/MUSE/Related_paper_data/cpdb`
But I got an Erro…
-
Hi! I'm sorry to bother you again.
I used your new tutorial to estimate the metabolite abundances and got the metabolite-protein interactions results using LIANA+. That helps me a lot.
But I have so…
-
Hi there
As you mentioned in the tutorial, the interactions are not symmetric. So, I am wondering how we can infer the directionality of the interactions.
Best
-
Hey all,
I am running this code:
`cellphonedb plot dot_plot --means-path /home/schweir3/CellphoneDB/Results/means.txt --pvalues-path /home/schweir3/CellphoneDB/Results/pvalues.txt --output-path /h…
Zaein updated
2 years ago
-
Hello CellphoneDB team,
Thanks for your excellent work in providing powerful tools for researchers. The method 3 DEG analysis is useful for us to detect more LR pairs than the previous versions. But …
-
Hi,
Thanks for making cellphoneDB, I am wondering would it be possible to directly compare between two groups for each ligand receptor pairs and get a p value for the comparison in cellphoneDB?
…
-
Hi,
Does NCEM support 10x visium datasets ? This is a widely used platform, if NCEM support 10x visium, I think it will become more active becasue so may labs work with 10x visium. We know that there…
-
Hi !
Running cellphonedb the progrsess bar don't show due to :
Warning: `progress_estimated()` was deprecated in dplyr 1.0.0.
Thanks !