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hi there,
I've been reading in some multiple sequence alignments, as DNAStringSet objects. They're nucleotide alignments that encode proteins. I've been playing with using 'translate', but it looks…
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When PyNNDescentTransformer is used with KNeighborsClassifier with cosine metric, it raises an error:
```
pynndescent_ann = make_pipeline(
PyNNDescentTransformer(metric="cosine", random_state=0…
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The code:
from python import re
regexPattern = '|'.join(map(re.escape, delimiters))
which was inspired by:
https://stackoverflow.com/questions/4998629/split-string-with-multiple-delimiters-i…
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Refactor YAL5-single-codons.R and YAL5-codon-pairs.R to separate concerns within each script [Edward will provide requirements], comment using Roxygen2-style comments, add `testthat.R` compliant tests…
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Hello, I am trying this program. My commands are as follows:
galba.pl --genome=${genome_file} --prot_seq=${protein_file} --threads 40
My error is as follows:
ERROR in file ~/software/GALBA/scrip…
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Would like to map all codons/codon pairs in a single plot in order to visualise and identify inhibitory codons/codon pairs, e.g. a scatter plot. This will require an enrichment score for codons/codon …
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Do you recommend any tool to annotate 5'UTR, CDS, 3UTR features in the isoforms generated from `FLAIR`
akk01 updated
2 years ago
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Was planning to parallelize a map, but before I could even // that simple code, which runs fine in python3, just made my computer go crazy with Codon, I'm probably missing something:
```python
imp…
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Hi,
I find it puzzling the `--reference` sometimes accepts ID of the reference record in the msa, I suggest the flag to be renamed. Other `gofasta` commands expect a filename after it so it is easy…
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Hello,
I would like to run factR2 on a custom assembly where I ran in the issue described in [https://github.com/f-hamidlab/factR2/issues/7](issue#7). So I thought I try it on the example data you …