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Hi, @bmill3r
Sorry to trouble you. I'm new to analyzing spatial transcriptomes. I am trying to do it with your tools to deconvolve. I have two questions.First, I see the tutorial in “https://github…
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Hi @silverbottlep ,
Thanks for the great code!
I'm right now trying to apply this code to my setting (different \theta, \phi, etc.), so I have to generate the dataset myself. I wonder how did you g…
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Stain이란, 의사들이 특정 장기의 조직을 볼 때, 시각적 도움을 얻기 위해서 염색하는 것을 의미합니다.
가장 많이 사용되는 Stain 중 하나는 H&E.
Hematoxylin은 세포의 핵, 핵 내의 염색질, 핵막, Eosin은 대조염색제로서, H이 염색하지 않는 것들을 붉은색으로 염색함.
Stain을 진행하는 과정에 있어서, 국가별로 기관별로 …
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Hi @cdgatenbee,
Thanks for creating VALIS - proving incredibly useful in my large format slide analysis.
I have some questions I was hoping you could help with to see if I can improve outputs.
…
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Hi
Great tool, thanks!
I've managed to get Calculate-Transforms to work on some ome.tiff files but when I tried to Apply-Transforms I get the following error:
`ERROR: Cannot invoke method readI…
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Hi, I try your code recently and it works well and fast. Thanks!
However, I really need to do some simple deconvolution process for thousands of times. This means I need some like batch input and out…
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Dear MCMICRO Team,
I stumble upon this problem. I have my project with raw (where my raw data is separated only by "_".raw.qptiff).
I have my marker.csv and my params.yml
Here are the params.yml:…
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Hello!
Have you tested the model with high resolution images (512, 1024, ...)? Pictures are also drawn with high quality?
What parameters do you recommend to change to train 512x512 and 1024x102…
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Great package! When trying to run
```
model, loss = utils.run_starfysh(visium_args,
n_repeats=n_repeats,
epochs=epochs,
…
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library(shiny)
library(ggplot2)
ui