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### Tasks
- [ ] Develop backend.
- [ ] Develop frontend.
### Additional Notes
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The consensus produced by `tracy` and currently output by assess_poliovirus_report covers a region larger than VP1. This should (optionally) be trimmed to the VP1 region.
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I am not sure to understand the meaning of this statement in the IBIS technical details.
>**3 Baseline Solutions**
>
>During the Leaderboard stage, the baseline for evaluating PWMs and AAAs …
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Dear pd,
Thank you for the software. When I use bcftools "consnensus genome" to get a pesudogenome with 20 chromosome numbers (genome size: about 2.5G), I only got three chromosomes and the left ones…
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Hello Professor,
I am running ERVcaller with the aim of applying it to my dataset and a consensus HERV-K sequence, to detect HERV-K polymorphisms in my samples. I have been testing your tool using …
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Present in nf-core multiqc report:
- fastqc metrics, including GC content
- mapping percentages (bowtie2)
- reads passing filters (cutadapt)
- trimmed sequence lengths (cutadapt)
- unique/multima…
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What are we expecting to see in this data. eg Are there barcodes?
It appears to be a 1 GB fasta file (which is a bit odd as fasta does not have quality info) filename: `R2C2_Consensus.fasta`
seq…
sr320 updated
2 months ago
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Hi Ya~~o~~n,
I've expanded few sequences with flanking nucleotides, then I've aligned them, obtaining the MSA and consensus sequence.
However, after aligning the expanded sequences, I would like…
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Hi,
I am working on the extraction of mitochondrial genes (mainly for COI) from UCE data. both two fq
file are 3.7 GB, i use the conmmand as follows:
MitoGeneExtractor-v1.9.5 -q AS_aura_YN_1.fq …
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Hi,
Do you provide any resource for the list of mutational changes per clade?
In the dataset that is acquired with Nextclade CLI, `nextstrain/sars-cov-2/wuhan-hu-1`, there is this statement in R…