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l'm on a Centos HPC, so installing with the regular CentOS instruction isn´t an option for me. Unfortunately, building the singularity image gives me an array of error which I'm trying to resolve at t…
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Let's say you already ran prodigal and/or have gene calls in GFF format, can you skip the prodigal run and provide the GFF file?
antiSMASH provides a similar option since it requires gene calls and…
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This issue covers 3 different types of CRISPR screens.
Related publications:
* https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8443183/
* https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181115/
* htt…
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when i use subprocess, the error coming from using subprocess is /home/DRs_1 permission required.
when i use snakemkae, the error is related to after refining and generating the fasta file from my in…
mf116 updated
8 months ago
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Hi ,
I always get error messages when I run CRISPRCasFinder. Is there any way I can fix it?
Although I get this error messages, the programma does not stop running and I still can get the results. I…
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Hello everyone!
I am running CRISPRloci in dna mode over a multi fasta and get the following error:
`
/work_beegfs/sunam157/CRISPRloci/CRISPRloci-1.0.0/Casboundary
Running Prodigal on input Fast…
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Cause I want to know the crispr/cas in genomes(refseq of bac and arc in NCBI), so I run this command,
`perl CRISPRCasFinder.pl -in ~/database_db/refseq/archaea_library.fna -so sel392v2.so -cas -keep …
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[I advise holding off on this ticket for now but I need a place to make some initial notes. I will be editing this ticket as I go along]
I am with @dustine32 looking at integrating the TCs @thomasp…
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Artificial womb development brings new hope for some preemies:
https://www.fox16.com/donna-terrells-family-health/artificial-womb-development-brings-new-hope-for-some-preemies/
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This SEP proposes a set of terminology and practices for representing genetic parts and functional devices at various stages of design, synthesis, and assembly. These practices are intended to represe…