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Russel88
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CRISPRCasTyper
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
https://typer.crispr.dk
MIT License
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Generation of core.xx file
#58
neptuneyt
opened
1 month ago
1
Output complete or partial of Cas system
#57
neptuneyt
opened
1 month ago
1
Impossible to obtain results with CrisprCasTyper
#56
Nabila44300
opened
2 months ago
6
Fresh install does not work: DistributionNotFound (xgboost)
#55
samnooij
opened
2 months ago
1
Source for repeats.fa
#54
qbilius
closed
2 months ago
1
error while loading shared libraries: libnsl.so.1
#53
mlarjim
opened
4 months ago
0
access to sequences that used to geenrate Cas profiles
#52
Huanle
opened
5 months ago
1
access to sequences that used to geenrate Cas profiles
#51
Huanle
closed
5 months ago
0
ValueError: invalid literal for int() with base 10: 'lengt'
#50
AndAvia
closed
5 months ago
2
(Question) How can I plot svg post-hoc after a run?
#49
jolespin
closed
8 months ago
1
If minced detects a CRISPR with N's in the repeat sequence
#48
Russel88
opened
9 months ago
0
Dev
#47
Russel88
opened
9 months ago
0
XGBoost model incompatible
#46
Matt-BF
closed
9 months ago
8
(Question) provide GFF file for pre computed gene calls?
#45
jolespin
opened
10 months ago
5
Orphan CRISPR definition
#44
bio-unach
closed
1 year ago
2
CCTyper results
#43
elozanoe
closed
1 year ago
4
Add option to input GFF and protein FASTA, and output prot_ids
#42
pentamorfico
closed
1 year ago
1
Add option to input GFF and protein FASTA, and output prot_ids
#41
pentamorfico
closed
1 year ago
2
castyping.py having an issue with positional arguments.
#40
jamesrgurney
opened
1 year ago
2
Creating empty files when there's no data
#39
nataquinones
opened
1 year ago
1
Meaning of asterisk at the end of protein sequence
#38
Smiriti-Gupta
closed
1 year ago
1
Option to use Prodigal-gv
#37
snayfach
closed
1 year ago
0
#36
Smiriti-Gupta
closed
1 year ago
0
Error when running cctyper: sed: cannot rename <output filename>/sed78a7GM: Permission denied
#35
jdcfc
closed
1 year ago
2
Different results from CRISPR Cas typer web server and standalone version
#34
Smiriti-Gupta
closed
1 year ago
5
Execution against protein fasta and gff
#33
xvtyzn
opened
1 year ago
2
A complement to CRISRPRCasFinder or its own thing?
#32
JavierFFavieres
closed
2 years ago
1
Complete genome and draft genome
#31
illusion-a
closed
2 years ago
2
FileNotFoundError: blast.tab
#30
TianyiChang
closed
2 years ago
3
No database with conda install?
#29
nicholascdove
closed
2 years ago
2
CrisprCasTyper webserver
#28
ShinyBasu
closed
2 years ago
1
Error in BLASTing for CRISPR near cas operons
#27
linzhl1
closed
2 years ago
4
Expose minced options
#26
jimmyliu1326
closed
2 years ago
1
add repeated sequence to repeats.fa
#25
fabgenomics
closed
2 years ago
1
Problems running the program
#24
JavierFFavieres
closed
2 years ago
3
Docker for cctyper
#23
mhyleung
closed
2 years ago
1
Multiple cctyper runs on the same contig giving different outputs?
#22
mhyleung
closed
2 years ago
2
faa file of individual Cas proteins?
#21
mhyleung
closed
2 years ago
7
Cas6 in red in visualization?
#20
mhyleung
closed
2 years ago
1
Question about spacer direction
#19
Dfvandenberg
closed
2 years ago
2
About spacer sequences
#18
wfgui
closed
2 years ago
1
alternative to minced?
#17
ltcall
opened
3 years ago
1
Warning messages while running
#16
LeeNicha
closed
3 years ago
3
Extract spacer coordinates
#15
genomesandMGEs
closed
2 years ago
3
cctyper dies with missing files
#14
jnesme
closed
3 years ago
4
Include I-B CAST loci
#13
Russel88
closed
1 year ago
0
Add support for numeric fasta headers
#12
Russel88
closed
3 years ago
1
Speed up CRISPR stats calculation
#11
Russel88
closed
3 years ago
1
Assembly accession in web server
#10
Russel88
closed
3 years ago
1
Fusion proteins
#9
Russel88
opened
3 years ago
0
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