-
Consider the following workflow:
```
cwlVersion: v1.2
class: Workflow
inputs:
input: int?
outputs: []
steps:
step:
in:
input:
source: input
valueFrom:…
-
It was recently found that CWL abstract workflows generated with gxformat2 fail to validate with `cwltool --validate` (see https://github.com/ResearchObject/ro-crate-py/issues/33 for some background).…
-
Workflows can be run from jupyter notebooks using:
```
%%bash
cwltool /home/jvdzwaan/cwl-working-dir/add_multiply_example_workflow.cwl --num1 2 --num2 3
```
-
(a.k.a custom hints or custom requirements)
- [ ] Seven Bridge
- [ ] main: https://github.com/rabix/bunny/wiki/CWL-draft-2-extensions
- [ ] https://docs.sevenbridges.com/docs/list-of-executio…
mr-c updated
8 months ago
-
```
#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool
inputs: []
baseCommand: [ bash, -c ]
arguments:
- "mkdir foo; echo 42 > foo/bar; ln -s $PWD/foo/bar foo/baz"
outputs:
…
mr-c updated
7 months ago
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From https://ci.commonwl.org/job/cwltool-conformance/lastCompletedBuild/testReport/result/xml/_failed_to_read_/
```
org.dom4j.DocumentException: Error on line 65 of document file:///var/lib/jenkins/j…
-
```
$ cwltool --pack cmsearch-multimodel-wf.cwl > cmsearch-multimodel-wf-packed.cwl
```
When importing the packed workflow in Galaxy, error below occurs
```
Traceback (most recent call last):…
ghost updated
5 years ago
-
This issue is related to `schema_salad.fetcher.DefaultFetcher.fetch_text`, and it is a bit difficult to reproduce. I have found it this late afternoon, when I tried next cwltool commands:
```
cwlt…
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Hello
great work with this tool. I made it work for several samples but having space/tmp dir problems with a larger samples
I tried to adapt according to your tip my code as follow (singularity mode…
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## Expected Behavior
When executing a yaml file with `cwltool --cachedir CACHE WORKFLOW.cwl` the input file with
```
cwl:tool: ../../workflows/workflow_ngtax.cwl
for_read_len: 100
forward_pr…