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I have a potentially dumb question. So, as I understand it, we need to discretize the data to work with this package on continuous biological data, such as gene expression or cytometry data. The inbui…
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Very interesting work, I was thinking to include this method in my cytometry pipeline (it will be released soon). Are you planning a release fo R?
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## *Repository Creation Request*
Use this to get your experiment repository created or updated on GitHub under Virtual Labs organization.
1. #### Coordinating Institute: IIT Guwahati
2. #### A…
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Phenograph offers a number of different functions designed for cytometry data, such as clustering and batch correction in Python. A wrapper for [Phenograph](https://github.com/dpeerlab/phenograph) fun…
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Possible data:
- [Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates](https://www.ncbi.nlm.nih.gov/pubmed/29769722): https://flowrepository.org/id/FR-FCM-ZY…
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Hi,
I'm a member of the HuBMAP CMU TC team. I'd like to test this great work on 3D Image Mass Cytometry (IMC) images, but I didn't see the manual/instruction as Cellpose has. Would you please walk …
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redirect from https://cp-website.github.io/imaging-flow-cytometry/ to http://cellprofiler.org/imagingflowcytometry/index.html
@mcquin I'm not sure about how to do this/ if it's possible... Can you o…
N3llz updated
7 years ago
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Hi,
In the tutorial, it's said "The triangle is colour-coded: White means more significant; Black means more probability that it happens by chance."
But in the paper "ImaCytE: Visual Exploration o…
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Hi,
In the article 'MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging', I noticed that the author also processed publicly availabel imaging mass cytometry (IMC) d…
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Hi gitdemont,
are you planning to add support for the flow imaging files generated by the machine FACSDiscover S8? The imaging files are saved in a .cvw file, but images can be exported as .TIFF.
…